Index

_

__eq__() (pram.entity.Group method) (pram.entity.Resource method) _check_ens() (pram.traj.Trajectory method) _db_conn_open() (pram.traj.TrajectoryEnsemble method)

_has_attr() (pram.entity.Group method) _has_rel() (pram.entity.Group method) _set_i() (pram.rule.Rule method) _set_t() (pram.rule.Rule method)

A

Action (class in pram.rule) ADD (pram.rule.PoissonIncidenceProcess.RateDeltaMode attribute) add() (pram.sim.Simulation method) add_group() (pram.graph.MassGraph method) (pram.pop.GroupPopulation method) (pram.sim.Simulation method) add_group_link() (pram.entity.Site method) add_groups() (pram.pop.GroupPopulation method) (pram.sim.Simulation method) add_mass_flow() (pram.graph.MassGraph method) add_probe() (pram.sim.Simulation method) add_probes() (pram.sim.Simulation method) add_resource() (pram.pop.GroupPopulation method) add_resources() (pram.pop.GroupPopulation method) add_rule() (pram.sim.Simulation method) add_rules() (pram.sim.Simulation method) add_series() (pram.signal.Signal method) add_sim_rule() (pram.sim.Simulation method) add_sim_rules() (pram.sim.Simulation method) add_site() (pram.pop.GroupPopulation method) (pram.sim.Simulation method) add_sites() (pram.pop.GroupPopulation method) (pram.sim.Simulation method) add_trajectories() (pram.traj.TrajectoryEnsemble method) add_trajectory() (pram.traj.TrajectoryEnsemble method) add_vita_group() (pram.pop.GroupPopulation method) allocate() (pram.entity.Resource method) allocate_all() (pram.entity.Resource method) allocate_any() (pram.entity.Resource method) an() (pram.rule.RuleAnalyzerTestRule method) analyze_rules_dynamic() (pram.sim.Simulation method) analyze_rules_dynamic_old() (pram.sim.Simulation method) analyze_rules_static() (pram.sim.Simulation method) APPEND (pram.data.ProbePersistenceMode attribute) apply() (pram.rule.CompoundInterstSeq method) (pram.rule.DiscreteInvMarkovChain method) (pram.rule.DiscreteVarMarkovChain method) (pram.rule.FibonacciSeq method) (pram.rule.GoToAndBackTimeAtRule method) (pram.rule.GoToRule method) (pram.rule.GroupMassDecByNumRule method) (pram.rule.GroupMassDecByPropRule method) (pram.rule.GroupMassIncByNumRule method) (pram.rule.GroupMassIncByPropRule method) (pram.rule.Noop method) (pram.rule.ODESystem method) (pram.rule.ODESystemAttr method) (pram.rule.ODESystemMass method) (pram.rule.PoissonIncidenceProcess method) (pram.rule.ResetRule method) (pram.rule.Rule method) (pram.rule.RuleAnalyzerTestRule method) (pram.rule.SegregationModel method) (pram.rule.SEIRModel method) (pram.rule.SimpleFluLocationRule method) (pram.rule.SimpleFluProgressMoodRule method) (pram.rule.SimpleFluProgressRule method) (pram.rule.SimRule method) (pram.rule.TimeSeriesObs method)

apply_back() (pram.rule.GoToAndBackTimeAtRule method) apply_E() (pram.rule.SEIRModel method) apply_err() (pram.rule.SEIRModel method) apply_I() (pram.rule.SEIRModel method) apply_R() (pram.rule.SEIRModel method) apply_rules() (pram.entity.Group method) (pram.pop.GroupPopulation method) apply_S() (pram.rule.SEIRModel method) apply_to() (pram.rule.GoToAndBackTimeAtRule method) archive() (pram.pop.GroupPopulation method) AT (pram.entity.Site attribute) attr (pram.entity.Group attribute) (pram.entity.GroupQry attribute) (pram.entity.Site attribute) ATTR (pram.rule.SEIRFluModel attribute) (pram.rule.SEIRModel attribute) attr_enc (pram.entity.Group attribute) (pram.entity.GroupQry attribute) attr_used (pram.entity.Group attribute) ATTRS (pram.rule.Rule attribute) (pram.rule.SEIRModel attribute) (pram.rule.SimpleFluLocationRule attribute) (pram.rule.SimpleFluProgressRule attribute)

B

b2h() (pram.util.Size static method) BernoulliProcess (class in pram.rule) BernoulliScheme (class in pram.rule) BirthDeathProcess (class in pram.rule) blob2obj() (pram.util.DB static method) by_attr() (pram.data.GroupProbe class method)

by_clinical_obs() (pram.model.epi.SEI2RModelParams class method) (pram.model.epi.SEIRModelParams class method) by_rel() (pram.data.GroupProbe class method) bytes2human() (pram.util.Size static method) bz2() (pram.util.FS static method) bz2_decomp() (pram.util.FS static method)

C

calc_lambda_add() (pram.rule.PoissonIncidenceProcess method) calc_lambda_exp() (pram.rule.PoissonIncidenceProcess method) calc_lambda_hmm() (pram.rule.PoissonIncidenceProcess method) calc_lambda_mul() (pram.rule.PoissonIncidenceProcess method) calc_lambda_nc() (pram.rule.PoissonIncidenceProcess method) callee (pram.entity.Group attribute) can_accommodate_all() (pram.entity.Resource method) can_accommodate_any() (pram.entity.Resource method) can_accommodate_one() (pram.entity.Resource method) capacity (pram.entity.Resource attribute) capacity_max (pram.entity.Resource attribute) CellularAutomaton (class in pram.rule) ChaoticMap (class in pram.rule) cleanup() (pram.rule.Rule method) (pram.rule.SEIRModel method) clear_group_names() (pram.traj.TrajectoryEnsemble method) clear_msg() (pram.data.GroupProbe method) clear_probes() (pram.data.ProbePersistenceDB method) (pram.sim.Simulation method) clear_rules() (pram.sim.Simulation method)

clear_sim_rules() (pram.sim.Simulation method) ClusterInf (class in pram.traj) commit_group() (pram.sim.Simulation method) comp_fft() (pram.traj.Trajectory static method) compact() (pram.pop.GroupPopulation method) (pram.sim.Simulation method) (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) compile_spec (pram.rule.Rule attribute) CompoundInterstSeq (class in pram.rule) cond (pram.entity.GroupQry attribute) conn_close() (pram.data.ProbePersistenceDB method) conn_open() (pram.data.ProbePersistenceDB method) Const (class in pram.data) ContinuousSpaceDiscreteTimeStochasticProcess (class in pram.rule) ContinuousSpacetimeStochasticProcess (class in pram.rule) Control (class in pram.rule) copy() (pram.entity.Group method) CotinuousMarkovChain (class in pram.rule) CoxProcess (class in pram.rule) CUMUL (pram.data.ProbeMsgMode attribute)

D

Data (class in pram.util) day_of_year_to_dt() (pram.util.Time static method) DB (class in pram.util) db() (pram.sim.Simulation method) DB_FK (class in pram.util) dec() (pram.util.MPCounter method) diff() (pram.util.Time static method) DifferenceEquation (class in pram.rule) diffs() (pram.util.Time static method) DiffusionProcess (class in pram.rule) dir_mk() (pram.util.FS static method) Directive (class in pram.rule) DiscreteInvMarkovChain (class in pram.rule)

DiscreteSpaceContinuousTimeStochasticProcess (class in pram.rule) DiscreteSpacetimeStochasticProcess (class in pram.rule) DiscreteVarMarkovChain (class in pram.rule) DISP (pram.data.ProbeMsgMode attribute) DistributionProcess (class in pram.rule) Disturbance (class in pram.rule) do_post_iter() (pram.pop.GroupPopulation method) done() (pram.entity.Group method) dotw() (pram.util.Time static method) DOTW_NUM2STR (pram.util.Time attribute) dt() (pram.util.Time static method) dt2ts() (pram.util.Time static method) dur2ms() (pram.util.Time static method)

E

E (pram.rule.SEIRModel.State attribute) end() (pram.util.Tee method) Equation (class in pram.rule) Err (class in pram.util)

EUGeography (class in pram.io.pop) Event (class in pram.rule) exec() (pram.util.DB method) exec_get() (pram.util.DB method) EXP (pram.rule.PoissonIncidenceProcess.RateDeltaMode attribute)

F

FibonacciSeq (class in pram.rule) float() (pram.util.Str static method) flush() (pram.data.ProbePersistenceDB method) (pram.util.Tee method) FLUSH_EVERY (pram.data.ProbePersistenceDB attribute) (pram.traj.TrajectoryEnsemble attribute)

FN (pram.rule.PoissonIncidenceProcess.RateDeltaMode attribute) Forcing (class in pram.rule) ForkDirective (class in pram.rule) freeze() (pram.pop.GroupPopulation method) FS (class in pram.util) full (pram.entity.GroupQry attribute)

G

ga() (pram.entity.Group method) (pram.entity.Site method) GammaDistributionProcess (class in pram.rule) gen_agent() (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) gen_agent_pop() (pram.pop.GroupPopulation method) (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) gen_diagram() (pram.sim.Simulation method) gen_dict() (pram.entity.Group static method) gen_from_db() (pram.entity.Group class method) (pram.entity.Site class method) gen_groups_from_db() (pram.sim.Simulation method) gen_groups_from_db_old() (pram.sim.Simulation method) gen_hash() (pram.entity.Group static method) (pram.entity.GroupQry static method) (pram.entity.Site static method) gen_mass_graph() (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) gen_sites_from_db() (pram.sim.Simulation method) gen_sites_from_db_old() (pram.sim.Simulation static method) Geography (class in pram.io.pop) get() (pram.io.pop.PopulationLocation method) get_args() (pram.traj.ClusterInf method) get_attr() (pram.entity.Group method) (pram.entity.Site method) get_attrs() (pram.entity.Group method) get_bg_mean() (pram.io.pop.PopulationLocation method) get_capacity() (pram.entity.Resource method) get_capacity_left() (pram.entity.Resource method) get_capacity_max() (pram.entity.Resource method) get_cols() (pram.util.DB method) (pram.util.PgDB method) (pram.util.SQLiteDB method) get_comp_hist() (pram.sim.Simulation method) get_contacts() (pram.io.pop.PopulationLocation method) get_contacts_bg_mean() (pram.io.pop.PopulationLocation method) get_contacts_by_day_of_year() (pram.io.pop.PopulationLocation method) get_contacts_date_mean() (pram.io.pop.PopulationLocation method) get_contacts_date_mean_by_day_of_year() (pram.io.pop.PopulationLocation method) get_data() (pram.data.GroupProbe method) (pram.data.ProbePersistenceDB method) get_date_mean() (pram.io.pop.PopulationLocation method) get_fk() (pram.util.DB method) (pram.util.PgDB method) (pram.util.SQLiteDB method) get_fn() (pram.rule.ODEDerivatives method) get_group() (pram.pop.GroupPopulation method) get_group_cnt() (pram.pop.GroupPopulation method) get_group_m() (pram.pop.GroupPopulationHistory method) get_groups() (pram.entity.Site method) (pram.pop.GroupPopulation method) get_groups_mass() (pram.pop.GroupPopulation method) get_groups_mass_and_prop() (pram.pop.GroupPopulation method) get_groups_mass_prop() (pram.pop.GroupPopulation method) get_hash() (pram.entity.Group method) (pram.entity.Resource method) get_hist() (pram.rule.ODESystem method) (pram.rule.ODESystemAttr method) (pram.rule.ODESystemMass method) get_id() (pram.util.DB method) (pram.util.PgDB method) (pram.util.SQLiteDB method) get_inner_rules() (pram.rule.Rule method) get_iter() (pram.sim.Simulation method) get_mass() (pram.entity.Group method) (pram.entity.Site method) (pram.pop.GroupPopulation method) get_mass_and_prop() (pram.entity.Site method) get_mass_prop() (pram.entity.Site method) get_mobility() (pram.io.pop.PopulationLocation method)

get_mobility_bg_mean() (pram.io.pop.PopulationLocation method) get_mobility_by_day_of_year() (pram.io.pop.PopulationLocation method) get_mobility_date_mean() (pram.io.pop.PopulationLocation method) get_mobility_date_mean_by_day_of_year() (pram.io.pop.PopulationLocation method) get_msg() (pram.data.GroupProbe method) get_name() (pram.util.DB method) (pram.util.PgDB method) (pram.util.SQLiteDB method) get_new_conn() (pram.util.DB method) (pram.util.PgDB method) (pram.util.SQLiteDB method) get_next_group_name() (pram.pop.GroupPopulation method) get_num() (pram.util.DB method) (pram.util.PgDB method) (pram.util.SQLiteDB method) get_p() (pram.rule.DistributionProcess method) get_pop() (pram.io.locale_db.LocaleDB method) get_pragma() (pram.sim.Simulation method) get_pragma_analyze() (pram.sim.Simulation method) get_pragma_autocompact() (pram.sim.Simulation method) get_pragma_autoprune_groups() (pram.sim.Simulation method) get_pragma_autostop() (pram.sim.Simulation method) get_pragma_autostop_n() (pram.sim.Simulation method) get_pragma_autostop_p() (pram.sim.Simulation method) get_pragma_autostop_t() (pram.sim.Simulation method) get_pragma_comp_summary() (pram.sim.Simulation method) get_pragma_fractional_mass() (pram.sim.Simulation method) get_pragma_live_info() (pram.sim.Simulation method) get_pragma_live_info_ts() (pram.sim.Simulation method) get_pragma_probe_capture_init() (pram.sim.Simulation method) get_pragma_rule_analysis_for_db_gen() (pram.sim.Simulation method) get_probe() (pram.sim.Simulation method) get_probes() (pram.sim.Simulation method) get_rand_name() (pram.rule.Rule static method) get_random_site() (pram.rule.SegregationModel method) get_rel() (pram.entity.Group method) get_rels() (pram.entity.Group method) get_row_cnt() (pram.util.DB method) get_signal() (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) get_sim() (pram.traj.Trajectory method) get_site_at() (pram.entity.Group method) get_site_cnt() (pram.pop.GroupPopulation method) get_size() (pram.util.Size static method) get_split_specs() (pram.rule.PoissonIncidenceProcess method) get_state() (pram.sim.Simulation method) get_states() (pram.rule.DiscreteInvMarkovChain method) (pram.rule.DiscreteVarMarkovChain method) get_time_series() (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) get_var() (pram.sim.Simulation method) GoToAndBackTimeAtRule (class in pram.rule) GoToRule (class in pram.rule) gr() (pram.entity.Group method) Group (class in pram.entity) GroupAttrProbe (class in pram.data) GroupDBRelSpec (class in pram.entity) GroupFrozenError GroupMassDecByNumRule (class in pram.rule) GroupMassDecByPropRule (class in pram.rule) GroupMassIncByNumRule (class in pram.rule) GroupMassIncByPropRule (class in pram.rule) GroupPopulation (class in pram.pop) GroupPopulationHistory (class in pram.pop) GroupProbe (class in pram.data) GroupQry (class in pram.entity) groups (pram.entity.Site attribute) GroupSizeProbe (class in pram.data) GroupSplitSpec (class in pram.entity) gz() (pram.util.FS static method) gz_decomp() (pram.util.FS static method)

H

ha() (pram.entity.Group method) has_attr() (pram.entity.Group method) has_rel() (pram.entity.Group method) has_sites() (pram.entity.Group method)

hash (pram.entity.Group attribute) (pram.entity.GroupQry attribute) (pram.entity.Site attribute) hr() (pram.entity.Group method)

I

I (pram.rule.SEIRModel.State attribute) inc() (pram.util.MPCounter method) Input (class in pram.rule) InteractingParticleSystem (class in pram.rule) Intervention (class in pram.rule) is_applicable() (pram.rule.DiscreteInvMarkovChain method) (pram.rule.DiscreteVarMarkovChain method) (pram.rule.FibonacciSeq method) (pram.rule.GoToAndBackTimeAtRule method) (pram.rule.GoToRule method) (pram.rule.ODESystemAttr method) (pram.rule.ODESystemMass method) (pram.rule.PoissonIncidenceProcess method) (pram.rule.ResetSchoolDayRule method) (pram.rule.ResetWorkDayRule method) (pram.rule.Rule method) (pram.rule.RuleAnalyzerTestRule method) (pram.rule.SegregationModel method) (pram.rule.SEIRModel method) (pram.rule.SimRule method)

is_applicable_group() (pram.rule.Rule method) is_applicable_iter() (pram.rule.Rule method) is_applicable_time() (pram.rule.Rule method) is_at_site() (pram.entity.Group method) is_at_site_name() (pram.entity.Group method) is_enc (pram.entity.Group attribute) (pram.entity.GroupQry attribute) is_prob() (pram.entity.GroupSplitSpec method) is_void() (pram.entity.Group method)

J

JumpProcess (class in pram.rule)

L

LevyProcess (class in pram.rule) link_to_site_at() (pram.entity.Group method) load() (pram.sim.Simulation static method) (pram.util.FS static method) load_bz2() (pram.sim.Simulation static method) (pram.util.FS static method) load_data() (pram.io.pop.PopulationLocation method) load_data_tbl() (pram.io.pop.PopulationLocation method) load_gz() (pram.sim.Simulation static method) (pram.util.FS static method)

load_or_gen() (pram.util.FS static method) load_sim() (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) load_sims() (pram.traj.TrajectoryEnsemble method) LocaleDB (class in pram.io.locale_db) LogisticMap (class in pram.rule) LorenzSystem (class in pram.rule) LotkaVolterraSystem (class in pram.rule) ls_geo_co() (pram.io.locale_db.LocaleDB method) ls_geo_st() (pram.io.locale_db.LocaleDB method)

M

m (pram.entity.Group attribute) (pram.entity.Site attribute) MarkovChain (class in pram.rule) MarkovProcess (class in pram.rule) MassFlowSpec (class in pram.pop) MassGraph (class in pram.graph) matches_qry() (pram.entity.Group method) matches_qry_full_cond0() (pram.entity.Group method) matches_qry_full_cond1() (pram.entity.Group method) matches_qry_part_cond0() (pram.entity.Group method) matches_qry_part_cond1() (pram.entity.Group method) MCSolver (class in pram.model.model) Model (class in pram.model.model) (class in pram.rule) ModelConstructionError module pram pram.data pram.entity pram.graph pram.io pram.io.locale_db pram.io.pop pram.model pram.model.epi pram.model.model pram.pop pram.rule pram.signal pram.sim pram.traj pram.util

MPCounter (class in pram.util) MUL (pram.rule.PoissonIncidenceProcess.RateDeltaMode attribute)

N

name (pram.entity.Group attribute) (pram.entity.Resource attribute) (pram.entity.Site attribute) NAME (pram.rule.GoToAndBackTimeAtRule attribute) (pram.rule.GoToRule attribute) (pram.rule.ResetRule attribute) (pram.rule.ResetSchoolDayRule attribute) (pram.rule.ResetWorkDayRule attribute) (pram.rule.Rule attribute) (pram.rule.RuleAnalyzerTestRule attribute) (pram.rule.SEIRFluModel attribute) (pram.rule.SEIRModel attribute) (pram.rule.SimpleFluLocationRule attribute) (pram.rule.SimpleFluProgressMoodRule attribute) (pram.rule.SimpleFluProgressRule attribute)

NC (pram.rule.PoissonIncidenceProcess.RateDeltaMode attribute) new_group() (pram.sim.Simulation method) NONE (pram.data.ProbeMsgMode attribute) Noop (class in pram.rule) NormalDistributionProcess (class in pram.rule) normalize_iter_range() (pram.traj.TrajectoryEnsemble method)

O

obj2blob() (pram.util.DB static method) ODEDerivatives (class in pram.rule) ODeltaESystem (class in pram.rule) ODESolver (class in pram.model.model) ODESystem (class in pram.rule)

ODESystemAttr (class in pram.rule) ODESystemMass (class in pram.rule) OneDecayProcess (class in pram.rule) open_conn() (pram.util.DB method) OrnsteinUhlenbeckProcess (class in pram.rule) OVERWRITE (pram.data.ProbePersistenceMode attribute)

P

PATT_STR_DUR (pram.util.Time attribute) PATT_VALID_NAME (pram.util.DB attribute) persist() (pram.data.ProbePersistenceDB method) (pram.data.ProbePersistenceFS method) persist_standalone() (pram.data.ProbePersistenceDB method) persist_traj_ens() (pram.data.ProbePersistenceDB method) persist_traj_ens_exec__() (pram.data.ProbePersistenceDB method) persist_traj_ens_remote() (pram.data.ProbePersistenceDB method) persist_traj_ens_schedule__() (pram.data.ProbePersistenceDB method) Perturbation (class in pram.rule) PgDB (class in pram.util) plot() (pram.data.GroupProbe method) (pram.data.Probe method) (pram.data.ProbePersistenceDB method) (pram.rule.DistributionProcess method) (pram.sim.Simulation method) plot_autocorr() (pram.signal.Signal method) plot_group_size() (pram.sim.Simulation method) plot_heatmap() (pram.traj.Trajectory method) plot_line() (pram.data.ProbePersistenceDB method) plot_mass_flow_time_series() (pram.graph.MassGraph method) (pram.traj.Trajectory method) plot_mass_locus_bubble() (pram.traj.TrajectoryEnsemble method) plot_mass_locus_fft() (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) plot_mass_locus_line() (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) plot_mass_locus_line_aggr() (pram.traj.TrajectoryEnsemble method) plot_mass_locus_line_probe() (pram.traj.TrajectoryEnsemble method) plot_mass_locus_polar() (pram.traj.TrajectoryEnsemble method) plot_mass_locus_recurrence() (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) plot_mass_locus_scaleogram() (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) plot_mass_locus_spectrogram() (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) plot_mass_locus_streamgraph() (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) plot_site_size() (pram.sim.Simulation method) PoissonIncidenceProcess (class in pram.rule) PoissonIncidenceProcess.RateDeltaMode (class in pram.rule) PoissonProcess (class in pram.rule) pop (pram.entity.Group attribute) (pram.rule.Rule attribute) PopulationLocation (class in pram.io.pop)

POSIX_DT (pram.util.Time attribute) POSIX_TS (pram.util.Time attribute) pram module pram.data module pram.entity module pram.graph module pram.io module pram.io.locale_db module pram.io.pop module pram.model module pram.model.epi module pram.model.model module pram.pop module pram.rule module pram.signal module pram.sim module pram.traj module pram.util module PREFIX_BIN (pram.util.Size attribute) PREFIX_DEC (pram.util.Size attribute) ProbabilisticAutomaton (class in pram.rule) ProbabilisticEquation (class in pram.rule) Probe (class in pram.data) ProbeMsgMode (class in pram.data) ProbePersistenceDB (class in pram.data) ProbePersistenceFS (class in pram.data) ProbePersistenceMem (class in pram.data) ProbePersistenceMode (class in pram.data) Process (class in pram.rule)

Q

quantize() (pram.signal.Signal method)

R

R (pram.rule.SEIRModel.State attribute) rand_bin_lst() (pram.util.Data static method) rand_float_lst() (pram.util.Data static method) RandomWalk (class in pram.rule) reg_probe() (pram.data.ProbePersistenceDB method) (pram.data.ProbePersistenceFS method) reg_probe_standalone() (pram.data.ProbePersistenceDB method) reg_probe_traj_ens() (pram.data.ProbePersistenceDB method) reg_probe_traj_ens_remote() (pram.data.ProbePersistenceDB method) rel (pram.entity.Group attribute) (pram.entity.GroupQry attribute) rel_enc (pram.entity.Group attribute) (pram.entity.GroupQry attribute) rel_name (pram.entity.Site attribute) rel_used (pram.entity.Group attribute) release() (pram.entity.Resource method) rem_probe() (pram.sim.Simulation method) rem_rule() (pram.sim.Simulation method) remote_after() (pram.data.ProbePersistenceDB method) (pram.sim.Simulation method) remote_before() (pram.data.ProbePersistenceDB method) (pram.sim.Simulation method) req_file() (pram.util.FS static method) reset_cb() (pram.sim.Simulation method)

reset_comp_hist() (pram.sim.Simulation method) reset_group_links() (pram.entity.Site method) reset_pop() (pram.sim.Simulation method) reset_pragmas() (pram.sim.Simulation method) reset_probes() (pram.sim.Simulation method) reset_rules() (pram.sim.Simulation method) reset_sim_rules() (pram.sim.Simulation method) reset_vars() (pram.sim.Simulation method) ResetRule (class in pram.rule) ResetSchoolDayRule (class in pram.rule) ResetWorkDayRule (class in pram.rule) Resource (class in pram.entity) rn() (pram.rule.RuleAnalyzerTestRule method) Rule (class in pram.rule) RuleAnalyzerTestRule (class in pram.rule) run() (pram.data.GroupAttrProbe method) (pram.data.GroupSizeProbe method) (pram.data.Probe method) (pram.sim.Simulation method) (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) run__comp_summary() (pram.sim.Simulation method) run__par() (pram.traj.TrajectoryEnsemble method) run__seq() (pram.traj.TrajectoryEnsemble method)

S

S (pram.rule.SEIRModel.State attribute) save() (pram.sim.Simulation method) (pram.util.FS static method) save_bz2() (pram.sim.Simulation method) (pram.util.FS static method) save_groups() (pram.traj.TrajectoryEnsemble method) save_gz() (pram.sim.Simulation method) (pram.util.FS static method) save_iter() (pram.traj.TrajectoryEnsemble method) save_mass_flow() (pram.traj.TrajectoryEnsemble method) save_mass_locus__par() (pram.traj.TrajectoryEnsemble method) save_mass_locus__seq() (pram.traj.TrajectoryEnsemble method) save_sim() (pram.traj.Trajectory method) (pram.traj.TrajectoryEnsemble method) save_sims() (pram.traj.TrajectoryEnsemble method) save_state() (pram.sim.Simulation method) (pram.traj.Trajectory method) save_work() (pram.traj.TrajectoryEnsemble method) schema_from (pram.util.DB_FK attribute) schema_to (pram.util.DB_FK attribute) sec2time() (pram.util.Time static method) SegregationModel (class in pram.rule) SEI2RModelParams (class in pram.model.epi) SEIRFluModel (class in pram.rule) SEIRModel (class in pram.model.epi) (class in pram.rule) SEIRModel.State (class in pram.rule) SEIRModelParams (class in pram.model.epi) SEQIHRModel (class in pram.model.epi) Sequence (class in pram.rule) set() (pram.sim.Simulation method) set_attr() (pram.entity.Group method) set_attrs() (pram.entity.Group method) set_cb_after_iter() (pram.sim.Simulation method) set_cb_before_iter() (pram.sim.Simulation method) set_cb_check_work() (pram.sim.Simulation method) set_cb_save_state() (pram.sim.Simulation method) set_cb_upd_progress() (pram.sim.Simulation method) set_consts() (pram.data.GroupProbe method) set_contacts_first_day_of_year() (pram.io.pop.PopulationLocation method) set_dist() (pram.rule.DistributionProcess method) set_fn_group_setup() (pram.sim.Simulation method) set_group_name() (pram.traj.TrajectoryEnsemble method) set_group_names() (pram.graph.MassGraph method) (pram.traj.TrajectoryEnsemble method) set_id() (pram.traj.Trajectory method) set_mobility_first_day_of_year() (pram.io.pop.PopulationLocation method) set_params() (pram.model.model.Model method) (pram.rule.ODEDerivatives method) (pram.rule.ODESystem method) (pram.rule.ODESystemAttr method) (pram.rule.ODESystemMass method) (pram.rule.Rule method) set_persistence() (pram.data.Probe method) set_pop() (pram.data.Probe method) set_pop_view_household() (pram.io.locale_db.LocaleDB method) set_pop_view_household_geo() (pram.io.locale_db.LocaleDB method) set_pos() (pram.graph.MassGraph method) set_pragma() (pram.sim.Simulation method)

set_pragma_analyze() (pram.sim.Simulation method) set_pragma_autocompact() (pram.sim.Simulation method) set_pragma_autoprune_groups() (pram.sim.Simulation method) set_pragma_autostop() (pram.sim.Simulation method) set_pragma_autostop_n() (pram.sim.Simulation method) set_pragma_autostop_p() (pram.sim.Simulation method) set_pragma_autostop_t() (pram.sim.Simulation method) set_pragma_comp_summary() (pram.sim.Simulation method) set_pragma_fractional_mass() (pram.sim.Simulation method) set_pragma_live_info() (pram.sim.Simulation method) set_pragma_live_info_ts() (pram.sim.Simulation method) set_pragma_memoize_group_ids() (pram.traj.TrajectoryEnsemble method) set_pragma_probe_capture_init() (pram.sim.Simulation method) set_pragma_rule_analysis_for_db_gen() (pram.sim.Simulation method) set_pragmas() (pram.sim.Simulation method) set_rand_seed() (pram.sim.Simulation method) set_rel() (pram.entity.Group method) set_rels() (pram.entity.Group method) set_setting() (pram.io.pop.PopulationLocation method) set_t_unit() (pram.rule.Rule method) set_traj_id() (pram.data.Probe method) set_var() (pram.sim.Simulation method) set_vars() (pram.sim.Simulation method) setup() (pram.rule.PoissonIncidenceProcess method) (pram.rule.Rule method) (pram.rule.SEIRModel method) (pram.rule.SimpleFluProgressRule method) show_rule_analysis() (pram.sim.Simulation method) show_rule_analysis_dynamic() (pram.sim.Simulation method) show_rule_analysis_static() (pram.sim.Simulation method) show_stats() (pram.traj.TrajectoryEnsemble method) show_summary() (pram.sim.Simulation method) Signal (class in pram.signal) SimpleFluLocationRule (class in pram.rule) SimpleFluProgressMoodRule (class in pram.rule) SimpleFluProgressRule (class in pram.rule) SimRule (class in pram.rule) Simulation (class in pram.sim) SimulationConstructionError SimulationConstructionWarning SIRModel (class in pram.model.epi) SIRModelGillespie (class in pram.rule) SIRSModel (class in pram.model.epi) SISModel (class in pram.model.epi) Site (class in pram.entity) Size (class in pram.util) Solver (class in pram.model.model) split() (pram.entity.Group method) SQL_CREATE_SCHEMA (pram.traj.TrajectoryEnsemble attribute) SQLiteDB (class in pram.util) StationaryProcess (class in pram.rule) Stimulus (class in pram.rule) StochasticCellularAutomaton (class in pram.rule) StochasticProcess (class in pram.rule) Str (class in pram.util) str_to_name() (pram.util.DB static method) str_to_type() (pram.util.DB method) (pram.util.PgDB static method) (pram.util.SQLiteDB static method) System (class in pram.rule)

T

Tee (class in pram.util) Time (class in pram.util) TIME_PDF_BACK_DEF (pram.rule.GoToAndBackTimeAtRule attribute) TIME_PDF_TO_DEF (pram.rule.GoToAndBackTimeAtRule attribute) TimeSeriesFn (class in pram.rule) TimeSeriesObs (class in pram.rule) toJson() (pram.entity.Resource method) tp2rv() (pram.rule.Rule static method)

Trajectory (class in pram.traj) TrajectoryEnsemble (class in pram.traj) TrajectoryError transfer_mass() (pram.pop.GroupPopulation method) ts() (pram.util.Time static method) ts2dt() (pram.util.Time static method) ts_sec() (pram.util.Time static method) tsdiff2human() (pram.util.Time static method) type() (pram.util.Err static method)

U

UNITS (pram.io.pop.USGeography attribute)

USGeography (class in pram.io.pop)

V

VALID_CHARS (pram.util.DB attribute) value() (pram.util.MPCounter method)

Var (class in pram.data) VOID (pram.entity.Group attribute)

W

WEBDRIVER (pram.traj.TrajectoryEnsemble attribute) WienerProcess (class in pram.rule)

with_traj() (pram.data.ProbePersistenceDB class method) write() (pram.util.Tee method)